SCOP: a novel scaffolding algorithm based on contig classification and optimization.
Min LiLi TangFang-Xiang WuYi PanJianxin WangPublished in: Bioinform. (2019)
Keyphrases
- optimization algorithm
- preprocessing
- classification algorithm
- dynamic programming
- learning algorithm
- constrained optimization
- matching algorithm
- support vector machine svm
- worst case
- particle swarm optimization
- stochastic gradient
- optimization method
- classification method
- detection algorithm
- expectation maximization
- classification accuracy
- computational complexity
- computational cost
- objective function
- recognition algorithm
- text classification
- decision trees
- accuracy rate
- classification scheme
- combinatorial optimization
- optimal solution
- np hard
- support vector
- training set
- optimization process
- k means
- classification rate
- probabilistic model
- optimization problems