Pairwise Sequence Alignment with Gaps with GPU.
Thomas C. CarrollJude-Thaddeus OjiakuPrudence W. H. WongPublished in: CLUSTER (2015)
Keyphrases
- sequence alignment
- pairwise
- gpu accelerated
- real time
- multiple sequence alignment
- graphics hardware
- similarity measure
- markov random field
- multiple alignment
- gpu implementation
- phylogenetic analysis
- parallel implementation
- dynamic programming
- graphics processing units
- parallel computing
- protein structure
- protein sequences
- comparative genomics
- high dimensional