Optimizations of Sequence Alignment on FPGA: A Case Study of Extended Sequence Alignment (Abstact Only).
Zheming JinKazutomo YoshiiPublished in: FPGA (2018)
Keyphrases
- sequence alignment
- pairwise
- dynamic programming
- gpu accelerated
- protein sequences
- amino acids
- high speed
- binding sites
- real time
- low cost
- multiple sequence alignment
- phylogenetic analysis
- hardware implementation
- protein structure
- field programmable gate array
- sequence databases
- medical images
- multi dimensional
- comparative genomics
- data sets