Discriminating between rate heterogeneity and interspecific recombination in DNA sequence alignments with phylogenetic factorial hidden Markov models.
Dirk HusmeierPublished in: ECCB/JBI (2005)
Keyphrases
- hidden markov models
- dna sequences
- dna computing
- human genome
- gene structure prediction
- speech recognition
- markov models
- conditional random fields
- binding sites
- gene prediction
- biological sequences
- viterbi algorithm
- genomic sequences
- markov model
- baum welch
- transcription factors
- multiple sequence alignment
- hidden state
- sequential data
- sequence alignment
- pairwise