Public microarray repository semantic annotation with ontologies employing text mining and expression profile correlation.
David RuauCorinna KolárikHeinz-Theodor MevissenEmmanuel MüllerIra AssentRalph KriegerThomas SeidlMartin Hofmann-ApitiusMartin ZenkePublished in: BMC Bioinform. (2008)
Keyphrases
- microarray
- semantic annotation
- text mining
- domain ontology
- expression profiles
- semantic web
- gene expression
- high throughput
- gene expression data
- gene networks
- microarray data
- experimental conditions
- cell cycle
- data mining
- gene expression profiles
- natural language processing
- information retrieval
- gene ontology
- gene selection
- molecular biology
- information extraction
- microarray datasets
- network analysis
- knowledge discovery
- high dimensionality
- clustering analysis
- semi automatic
- domain specific
- domain knowledge
- biomedical literature
- biological processes
- machine learning
- knowledge representation
- data analysis
- artificial intelligence
- metadata
- regulatory networks
- gene sets
- protein interaction data
- biological networks
- highly correlated
- statistically significant
- training data
- knowledge base
- feature selection