CUDASW++ 3.0: accelerating Smith-Waterman protein database search by coupling CPU and GPU SIMD instructions.
Yongchao LiuAdrianto WirawanBertil SchmidtPublished in: BMC Bioinform. (2013)
Keyphrases
- smith waterman
- database
- sequence databases
- databases
- biological sequences
- parallel implementation
- parallel processing
- subsequence matching
- protein sequences
- sequence alignment
- parallel algorithm
- graphics processing units
- database systems
- single instruction multiple data
- indexing techniques
- parallel computing
- search tools
- data model
- machine learning