CMSA: a heterogeneous CPU/GPU computing system for multiple similar RNA/DNA sequence alignment.
Xi ChenChen WangShanjiang TangCe YuQuan ZouPublished in: BMC Bioinform. (2017)
Keyphrases
- sequence alignment
- gpu accelerated
- binding sites
- multiple alignment
- heterogeneous computing
- pairwise
- secondary structure
- graphics processing units
- graphics processors
- real time
- comparative genomics
- gpu implementation
- smith waterman
- sequence databases
- parallel implementation
- amino acids
- gene expression
- reinforcement learning