An SIMD Algorithm for Wraparound Tandem Alignment.
Joshua LovingJohn P. ScadutoGary BensonPublished in: ISBRA (2017)
Keyphrases
- cost function
- optimal solution
- learning algorithm
- dynamic programming
- significant improvement
- theoretical analysis
- times faster
- experimental evaluation
- computational cost
- optimization algorithm
- detection algorithm
- matching algorithm
- improved algorithm
- np hard
- preprocessing
- recognition algorithm
- linear programming
- computational complexity
- k means
- multiple sequence alignment
- real time
- segmentation algorithm
- particle swarm optimization
- simulated annealing
- worst case
- probabilistic model
- search space