Prediction of Protein-RNA interaction site using SVM-KNN algorithm with spatial information.
Wei ChenShao-Wu ZhangYongmei ChengQuan PanPublished in: BIBM (2010)
Keyphrases
- spatial information
- knn algorithm
- knn
- protein interaction
- k nearest neighbor
- support vector machine svm
- subcellular localization
- contact map
- k nearest neighbour
- support vector machine
- protein protein interactions
- nearest neighbor
- protein structure prediction
- remote homology detection
- support vector
- spatial distribution
- temporal information
- spatial relations
- spatial relationships
- protein structure
- neural network
- feature selection
- computational methods
- distance function
- text classification
- intensity values
- text categorization
- information extraction
- protein folding
- string kernels
- spatial features
- genome wide
- svm classifier
- color histogram
- amino acids
- visual words
- similarity search
- secondary structure
- feature extraction
- rna secondary structures
- structural motifs
- face recognition