Dynamic Programming for LR-PCR Segmention of Bacterium Genomes.
Rumen AndonovDominique LavenierPhilippe VeberNicola YanevPublished in: IPDPS (2004)
Keyphrases
- dynamic programming
- sequence data
- comparative genomics
- sequence alignment
- logistic regression
- phylogenetic analysis
- sequence analysis
- dna sequences
- linear programming
- optimal control
- human genome
- molecular biology
- low resolution
- markov decision processes
- dp matching
- infinite horizon
- genomic data
- state space
- reinforcement learning
- genomic sequences
- dynamic programming algorithms
- comparative analysis
- stereo matching
- machine learning
- phylogenetic trees
- neural network
- greedy algorithm
- multiresolution
- genome sequences
- video sequences
- moving window
- immune response
- objective function
- high quality