An Algorithm for the Energy Barrier Problem Without Pseudoknots and Temporary Arcs.
Chris ThachukJán ManuchArash RafieyLeigh-Anne MathiesonLadislav StachoAnne CondonPublished in: Pacific Symposium on Biocomputing (2010)
Keyphrases
- times faster
- cost function
- computationally efficient
- simulated annealing
- optimization algorithm
- dynamic programming
- preprocessing
- recognition algorithm
- np hard
- objective function
- computational cost
- theoretical analysis
- convergence rate
- detection algorithm
- improved algorithm
- rna secondary structure prediction
- learning algorithm
- particle swarm optimization
- computational complexity
- optimal solution
- similarity measure
- expectation maximization
- bit rate
- linear programming
- worst case
- experimental evaluation
- energy function
- k means
- energy minimization
- neural network