Finding short DNA motifs using permuted markov models.

Xiaoyue Zhao Haiyan Huang Terence P. Speed

Published in: RECOMB (2004)

Keyphrases

markov models
dna sequences
markov model
maximum entropy
higher order
hidden markov models
binding sites
biological sequences
sequence classification
conditional random fields
hidden state
motif discovery
sequence prediction
markov chain
probabilistic model
gene expression
markov random field
dynamic programming