An RNA folding algorithm including pseudoknots based on dynamic weighted matching.
Haijun LiuDong XuJianlin ShaoYifei WangPublished in: Comput. Biol. Chem. (2006)
Keyphrases
- rna secondary structure prediction
- matching algorithm
- detection algorithm
- dynamic programming
- preprocessing
- learning algorithm
- cost function
- np hard
- worst case
- segmentation algorithm
- optimal solution
- objective function
- image matching
- string matching
- computational complexity
- k means
- computational cost
- particle swarm optimization
- similarity measure
- genome wide
- approximate matching
- genetic algorithm