Bi-objective integer programming for RNA secondary structure prediction with pseudoknots.
Audrey LegendreEric AngelFariza TahiPublished in: BMC Bioinform. (2018)
Keyphrases
- rna secondary structure prediction
- bi objective
- integer programming
- efficient solutions
- multi objective
- set covering problem
- np hard
- multi objective optimization
- multiple objectives
- ant colony optimization
- linear programming
- knapsack problem
- network design
- rna sequences
- secondary structure
- constraint programming
- column generation
- rna secondary structures
- shortest path problem
- computational biology
- optimal solution
- set covering
- nsga ii
- routing problem
- scheduling problem
- protein structure
- optimization algorithm
- hidden markov models
- evolutionary algorithm
- computational complexity