Guide tree optimization with genetic algorithm to improve multiple protein 3D-structure alignment.
Maksim V. ShegayVytas K. SvedasVladimir V. VoevodinDmitry A. SuplatovNina N. PopovaPublished in: Bioinform. (2022)
Keyphrases
- genetic algorithm
- tree structure
- multiple sequence alignment
- real coded
- global optimization
- optimization problems
- optimization method
- hierarchical structure
- genetic algorithm ga
- tree shaped
- multi objective
- xml documents
- sequence alignment
- tree structures
- protein structure alignment
- protein sequences
- structural motifs
- immune genetic algorithm
- multi population
- contact map
- multiple sequence alignments
- graph structure
- protein structure
- b tree
- index structure
- optimization algorithm
- evolutionary algorithm
- objective function