RNAspa: a shortest path approach for comparative prediction of the secondary structure of ncRNA molecules.
Yair HoreshTirza DonigerShulamit MichaeliRon UngerPublished in: BMC Bioinform. (2007)
Keyphrases
- secondary structure
- shortest path
- predicting protein
- protein secondary structure
- secondary structure prediction
- tertiary structure
- rna secondary structure prediction
- splice site
- shortest path problem
- rna sequences
- protein structure prediction
- protein sequences
- computational methods
- protein structure
- experimentally determined
- road network
- structural features
- protein folding
- shortest path algorithm
- optimal path
- prediction accuracy
- secondary structure of proteins
- multiple alignment
- amino acid sequences
- weighted graph
- solvent accessibility
- amino acids
- multiple sequence alignment
- shortest distance
- finding the shortest path
- path length
- psi blast
- rna secondary structures
- machine learning
- protein secondary structure prediction
- minimum spanning tree
- edge weights
- sensor networks