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A BLAS-Based Algorithm for Finding Position Weight Matrix Occurrences in DNA Sequences on CPUs and GPUs.
Jan Fostier
Published in:
IWBBIO (1) (2018)
Keyphrases
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dna sequences
dynamic programming
weight matrix
clustering method
similarity measure
k means
np hard
matching algorithm
worst case
image segmentation
object recognition
probabilistic model
knowledge discovery
motif discovery