PEAT: an intelligent and efficient paired-end sequencing adapter trimming algorithm.
Yun-Lung LiJui-Cheng WengChiung-Chih HsiaoMin-Te ChouChin-Wen TsengJui-Hung HungPublished in: BMC Bioinform. (2015)
Keyphrases
- single pass
- experimental evaluation
- dynamic programming
- computationally efficient
- optimization algorithm
- computational complexity
- learning algorithm
- preprocessing
- significant improvement
- highly efficient
- detection algorithm
- estimation algorithm
- segmentation algorithm
- improved algorithm
- matching algorithm
- theoretical analysis
- memory efficient
- expectation maximization
- high accuracy
- probabilistic model
- cost function
- search space
- linear programming
- worst case
- tree structure
- np hard
- path planning
- convergence rate
- optimal solution
- similarity measure
- data sets