CisOrtho: A program pipeline for genome-wide identification of transcription factor target genes using phylogenetic footprinting.
Henry R. BigelowAdam S. WenickAllan WongOliver HobertPublished in: BMC Bioinform. (2004)
Keyphrases
- genome wide
- transcription factors
- transcriptional regulation
- transcription factor binding sites
- dna binding
- transcriptional regulatory
- high throughput
- genome sequences
- human genome
- saccharomyces cerevisiae
- biological processes
- regulatory networks
- gene regulation
- genomic data
- cell cycle
- gene expression
- regulatory elements
- systems biology
- binding sites
- microarray
- gene sets
- differential expression
- cis regulatory
- expression profiles
- motif discovery
- chip seq
- machine learning
- component analysis
- signaling pathways
- biological data
- gene expression data