MetaFast: Enabling Fast Metagenomic Classification via Seed Counting and Edit Distance Approximation.
Arvid E. GollwitzerMohammed AlserJoel BergtholdtJoël LindeggerMaximilian-David RumpfCan FirtinaSerghei MangulOnur MutluPublished in: CoRR (2023)
Keyphrases
- edit distance
- pattern recognition
- decision trees
- graph matching
- machine learning
- similarity measure
- string similarity
- feature vectors
- closed form
- string matching
- string edit distance
- edit operations
- approximate matching
- graph edit distance
- tree structured data
- approximation algorithms
- support vector machine
- feature extraction
- feature selection
- tree edit distance
- distance measure
- levenshtein distance
- feature space