Using graph neural networks for site-of-metabolism prediction and its applications to ranking promiscuous enzymatic products.
Vladimir PorokhinLi-Ping LiuSoha HassounPublished in: Bioinform. (2023)
Keyphrases
- neural network
- prediction accuracy
- prediction model
- link analysis
- artificial neural networks to predict
- website
- metabolic pathways
- neural network ensemble
- ranking algorithm
- pattern recognition
- pagerank algorithm
- directed acyclic graph
- genetic algorithm
- neural networks and support vector machines
- ordinal regression
- graph model
- graph matching
- artificial neural networks
- random walk
- multilayer perceptron
- mutual reinforcement
- fuzzy logic
- product search
- web search
- connected components
- prediction error
- bipartite graph
- neural nets
- neural network model
- recurrent neural networks
- directed graph
- structured data
- graph databases
- weighted graph
- language model
- ranked list
- web pages