cljam: a library for handling DNA sequence alignment/map (SAM) with parallel processing.
Toshiki TakeuchiAtsuo YamadaTakashi AokiKunihiro NishimuraPublished in: Source Code Biol. Medicine (2016)
Keyphrases
- parallel processing
- sequence alignment
- binding sites
- pairwise
- sequence databases
- computational power
- processing speed
- distributed processing
- comparative genomics
- dna sequences
- phylogenetic analysis
- dynamic programming
- gene expression
- smith waterman
- protein sequences
- parallel computation
- ibm sp
- gpu accelerated
- statistical significance
- sequence data
- biological sequences
- multiple sequence alignment
- pc cluster
- multi dimensional
- multiple alignment
- general purpose
- real time
- parallel computers
- electronic circuits
- high throughput