Parallelization of DNA sequence alignment using OpenMP.
S. R. SatheDeepti D. ShrimankarPublished in: ICCCS (2011)
Keyphrases
- sequence alignment
- binding sites
- shared memory
- parallel execution
- sequence databases
- dna sequences
- comparative genomics
- distributed memory
- protein sequences
- biological sequences
- smith waterman
- phylogenetic analysis
- dna computing
- sequence data
- parallel programming
- gene expression
- transcription factors
- dynamic programming
- pairwise
- parallel algorithm
- parallel computing
- coarse grained
- parallel processing
- message passing
- statistical significance
- gpu accelerated
- parallel computation
- multiple sequence alignment
- high performance computing
- sequence analysis
- amino acids
- multiple alignment
- computational biology
- massively parallel
- multi core processors
- message passing interface
- protein structure prediction