Massive Multiple Sequence Alignment of 16S Bacterial Ribosomal RNAs Using ClustalW-Message Passing Interface (MPI) Based on Beowulf Linux System.
Hyon Chang KimYong Beom SeoJi Hwan SongDong Soon ChoiChurl K. MinHan Jip KimPublished in: CSB Workshops (2005)
Keyphrases
- multiple sequence alignment
- message passing interface
- rna sequences
- secondary structure
- protein sequences
- multiple alignment
- computational biology
- parallel implementation
- parallel algorithm
- high performance computing
- massively parallel
- message passing
- operating system
- parallel architectures
- shared memory
- computational methods
- parallel programming
- amino acids
- protein structure
- file system
- data analysis
- biological sequences
- memory efficient
- molecular biology
- parallel execution
- parallel computing
- belief propagation
- parallel computation
- genetic algorithm
- sequence alignment
- parallel machines
- machine learning
- processing units
- computing environments
- computer systems
- database systems