Implementation of Hybrid Alignment Algorithm for Protein Database Search on the SW26010 Many-Core Processor.
Hao ZhangYou FuLu-Bin FengYue ZhangRong HuaPublished in: IEEE Access (2019)
Keyphrases
- database
- search space
- search strategy
- learning algorithm
- search efficiency
- computational complexity
- sequence alignment
- np hard
- optimization algorithm
- objective function
- parallel implementation
- dynamic programming
- detection algorithm
- protein structure alignment
- hardware implementation
- matching algorithm
- worst case
- probabilistic model
- k means
- optimal solution
- solution space
- cost function
- pairwise
- search algorithm
- search mechanism