A new alignment free genome comparison algorithm based on statistically estimated feature frequency profile.
Hyein SeoDong-Ho ChoPublished in: EMBC (2017)
Keyphrases
- detection algorithm
- learning algorithm
- optimization algorithm
- objective function
- dynamic programming
- times faster
- significant improvement
- computational cost
- experimental evaluation
- expectation maximization
- particle swarm optimization
- high accuracy
- np hard
- search space
- preprocessing
- computational complexity
- matching algorithm
- recognition algorithm
- multiple sequence alignment
- genetic algorithm
- worst case
- simulated annealing
- pairwise
- optimal solution
- similarity measure