Edlib: a C/C ++ library for fast, exact sequence alignment using edit distance.
Martin SosicMile SikicPublished in: Bioinform. (2017)
Keyphrases
- edit distance
- sequence alignment
- dynamic programming
- pairwise
- edit operations
- graph matching
- similarity measure
- string matching
- approximate string matching
- protein sequences
- graph edit distance
- distance function
- distance measure
- levenshtein distance
- tree structured data
- amino acids
- approximate matching
- string similarity
- dynamic time warping
- normalized edit distance
- tree edit distance
- finite alphabet
- string edit distance
- sequence databases
- protein structure
- neural network
- distance computation
- record linkage
- binding sites
- dimensionality reduction