Maximizing systolic array efficiency to accelerate the PairHMM Forward Algorithm.
Johan PeltenburgShanshan RenZaid Al-ArsPublished in: BIBM (2016)
Keyphrases
- experimental evaluation
- probabilistic model
- np hard
- cost function
- detection algorithm
- significant improvement
- learning algorithm
- worst case
- preprocessing
- computational complexity
- computational efficiency
- similarity measure
- search space
- systolic array
- high efficiency
- times faster
- matching algorithm
- neural network
- simulated annealing
- high accuracy
- optimal solution
- dynamic programming
- k means
- computationally efficient
- segmentation algorithm
- optimization algorithm
- computational cost
- convergence rate
- pairwise
- single scan