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Heuristic Reusable Dynamic Programming: Efficient Updates of Local Sequence Alignment.
Changjin Hong
Ahmed H. Tewfik
Published in:
IEEE ACM Trans. Comput. Biol. Bioinform. (2009)
Keyphrases
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sequence alignment
dynamic programming
gpu accelerated
state space
pairwise
dynamic programming algorithms
multiple alignment
phylogenetic analysis
protein sequences
finite element
graph theoretic
lagrangian relaxation