RNA-MoIP: prediction of RNA secondary structure and local 3D motifs from sequence data.
Jason YaoVladimir ReinharzFrançois MajorJérôme WaldispühlPublished in: Nucleic Acids Res. (2017)
Keyphrases
- sequence data
- rna secondary structure prediction
- rna sequences
- rna secondary structures
- genome sequences
- biological sequences
- secondary structure
- binding sites
- nucleotide sequences
- dna sequences
- sequence analysis
- rna molecules
- profile hidden markov models
- protein sequences
- stochastic context free grammars
- edit distance
- motif finding
- alternative splicing
- free energy