Pairwise RNA secondary structure alignment with conserved stem pattern.
Jimmy Ka Ho ChiuYi-Ping Phoebe ChenPublished in: Bioinform. (2015)
Keyphrases
- rna sequences
- pairwise
- rna secondary structures
- sequence alignment
- rna secondary structure prediction
- secondary structure
- free energy
- dna sequences
- belief propagation
- protein sequences
- markov random field
- higher order
- rna molecules
- similarity measure
- pattern matching
- edit distance
- point sets
- stochastic context free grammars
- global alignment
- nearest neighbor
- computational methods
- amino acids
- graph matching
- query processing