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Improved GPU Implementations of the Pair-HMM Forward Algorithm for DNA Sequence Alignment.
Enliang Li
Subho S. Banerjee
Sitao Huang
Ravishankar K. Iyer
Deming Chen
Published in:
ICCD (2021)
Keyphrases
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sequence alignment
learning algorithm
gpu accelerated
k means
improved algorithm
dynamic programming
forward backward
worst case
parallel implementation
similarity measure
optimal solution
hidden markov models
statistical analysis
efficient implementation