Fine-grained GPU parallelization of pairwise local sequence alignment.
Chirag JainSubodh KumarPublished in: HiPC (2014)
Keyphrases
- sequence alignment
- fine grained
- pairwise
- coarse grained
- gpu accelerated
- parallel processing
- higher order
- parallel computation
- access control
- tightly coupled
- protein sequences
- similarity measure
- parallel computing
- real time
- multiple sequence alignment
- dynamic programming
- markov random field
- multiple alignment
- shared memory
- massively parallel
- amino acids
- phylogenetic analysis
- graphics processing units
- belief propagation
- web search
- data lineage