Optimization of BLAST Seed Indexing in the Alignment of DNA Sequences with GPU using CUDA.
Franklin Luis Antonio Cruz GameroJuan Carlos Gutiérrez-CáceresPublished in: CLEI (2018)
Keyphrases
- dna sequences
- sequence alignment
- binding sites
- dna sequencing
- dna computing
- rna sequences
- tandem repeats
- human genome
- problems in computational biology
- motif discovery
- graphics processing units
- database
- gene structure prediction
- gene prediction
- biological sequences
- coding regions
- sequence patterns
- indexing method
- parallel processing
- databases
- indexing methods
- transcription factors
- regulatory elements
- data management