A Parallel GPU-Designed Algorithm for the Constrained Multiple Sequence Alignment Problem.
Adam GudysSebastian DeorowiczPublished in: ICMMI (2011)
Keyphrases
- parallel implementation
- experimental evaluation
- learning algorithm
- improved algorithm
- detection algorithm
- computational complexity
- worst case
- objective function
- preprocessing
- search space
- computational cost
- expectation maximization
- high accuracy
- k means
- real time
- np hard
- data structure
- segmentation algorithm
- optimal solution
- times faster
- similarity measure
- graphics processing units
- dynamic programming
- simulated annealing
- clustering method
- image sequences
- gpu implementation
- gpu accelerated