AMMOS2: a web server for protein-ligand-water complexes refinement via molecular mechanics.
Céline M. LabbéTania PenchevaDessislava JerevaDimitri DesvillechabrolJérôme BécotBruno O. VilloutreixIlza PajevaMaria A. MitevaPublished in: Nucleic Acids Res. (2017)
Keyphrases
- web server
- virtual screening
- protein protein
- protein complexes
- drug design
- drug discovery
- protein protein interactions
- website
- similarity searching
- high throughput
- database server
- protein structure prediction
- protein interaction networks
- predicting protein
- interaction networks
- computational methods
- protein function
- web search engines
- ppi networks
- end users
- web browser
- computational approaches
- protein protein interaction networks
- web pages
- web usage mining
- binding sites
- computational biology
- log files
- protein sequences
- mass spectrometry
- web users
- protein interaction
- machine learning
- similarity search
- web server logs
- biological processes
- expert systems
- mobile agents
- molecular structures
- dynamic content
- web logs
- signaling pathways
- functional modules
- scientific data
- protein structure
- information extraction
- information retrieval