Protein-protein interaction site prediction based on conditional random fields.
Minghui LiLei LinXiaolong WangTao LiuPublished in: Bioinform. (2007)
Keyphrases
- conditional random fields
- protein protein interactions
- protein interaction
- predicting protein
- prediction accuracy
- web page prediction
- graphical models
- probabilistic model
- markov random field
- pairwise
- information extraction
- multiple sequence alignments
- crf model
- generative model
- hidden markov models
- sequence labeling
- higher order
- computational methods
- high precision
- ppi networks
- network analysis
- high throughput
- machine learning
- functional modules
- network topology
- protein interaction networks
- computational approaches
- biological data
- structural properties
- segmentation method
- prior knowledge
- gene expression