Improving Sequence Alignment Based Gene Functional Annotation with Natural Language Processing and Associative Clustering.
Ji HePublished in: ISNN (2) (2010)
Keyphrases
- sequence alignment
- natural language processing
- gene products
- pairwise
- gene ontology terms
- gene expression
- binding sites
- clustering algorithm
- gene function
- clustering method
- gene ontology
- dynamic programming
- k means
- protein sequences
- multiple alignment
- functional analysis
- phylogenetic analysis
- gene expression analysis
- amino acids
- information extraction
- gpu accelerated
- cluster analysis
- computational biology
- graph theoretic
- multiple sequence alignment
- wordnet
- gene expression profiles
- knowledge representation
- named entity recognition
- microarray data
- information theoretic
- text mining
- biomedical literature
- high dimensional data
- natural language
- comparative genomics
- feature selection