An algorithm for mapping short reads to a dynamically changing genomic sequence.
Tomás FlouriJan HolubCostas S. IliopoulosSolon P. PissisPublished in: BIBM (2010)
Keyphrases
- dynamically changing
- high accuracy
- learning algorithm
- dynamic programming
- k means
- detection algorithm
- preprocessing
- theoretical analysis
- times faster
- significant improvement
- cost function
- optimal solution
- similarity measure
- clustering method
- worst case
- search space
- computational cost
- np hard
- objective function
- segmentation algorithm
- mapping function
- image sequences
- convergence rate
- genetic algorithm
- optimization algorithm
- linear programming
- simulated annealing
- computational complexity
- search algorithm