Accelerating Smith-Waterman Alignment of Long DNA Sequences with OpenCL on FPGA.
Enzo RucciCarlos GarcíaGuillermo BotellaArmando De GiustiMarcelo R. NaioufManuel Prieto-MatíasPublished in: IWBBIO (2) (2017)
Keyphrases
- dna sequences
- smith waterman
- biological sequences
- sequence alignment
- binding sites
- human genome
- tandem repeats
- field programmable gate array
- motif discovery
- rna sequences
- dna computing
- subsequence matching
- sequence data
- shared memory
- protein sequences
- molecular biology
- databases
- biological data
- psi blast
- sequential patterns