A de novo genome assembler based on MapReduce and bi-directed de Bruijn graph.
Yuehua ZhangPengfei XuanYunsheng WangPradip K. SrimaniFeng LuoPublished in: BIBM (2016)
Keyphrases
- graph structure
- human genome
- graph representation
- sequence data
- genomic sequences
- graph theory
- graph model
- business intelligence
- random walk
- massive graphs
- dna sequences
- weighted graph
- directed graph
- motif discovery
- graph theoretic
- graph structures
- tandem mass spectra
- graph mining
- graph databases
- graphical models
- directed acyclic graph
- graph matching
- cloud computing
- data management