Alignment of Sequences Using a Genetic Algorithm and Dynamic Programming.
Vianney Morales ZamoraJosé Crispín Hernández HernándezJosé Federico Ramírez-CruzPublished in: BIOCOMP (2010)
Keyphrases
- sequence alignment
- dynamic programming
- genetic algorithm
- multiple sequence alignment
- multiple alignment
- pairwise
- state space
- artificial neural networks
- greedy algorithm
- global alignment
- phylogenetic analysis
- metaheuristic
- hidden markov models
- protein sequences
- neural network
- reinforcement learning
- evolutionary algorithm
- genetic algorithm ga
- optimal policy
- markov decision processes
- genetic programming
- multi objective
- biological sequences
- dynamic time warping
- coarse to fine
- hybrid algorithm
- fuzzy logic
- stereo matching
- fitness function
- linear programming
- binding sites
- ant colony optimization
- encoding scheme
- binary strings
- simulated annealing
- multi population