SALSA: improved protein database searching by a new algorithm for assembly of sequence fragments into gapped alignments.
Torbjørn RognesErling SeebergPublished in: Bioinform. (1998)
Keyphrases
- database
- improved algorithm
- sequence alignment
- computational complexity
- multiple sequence alignment
- cost function
- dynamic programming
- k means
- learning algorithm
- preprocessing
- detection algorithm
- simulated annealing
- databases
- multiple alignment
- ranking algorithm
- input data
- probabilistic model
- optimal solution
- objective function
- database systems
- worst case
- np hard
- particle swarm optimization
- relational databases
- path planning
- pairwise
- similarity measure