Implementation of a Parallel Algorithm for Protein Pairwise Alignment Using Reconfigurable Computing.
Guilherme Luiz MoritzCristiano JoryHeitor S. LopesCarlos Raimundo Erig LimaPublished in: ReConFig (2006)
Keyphrases
- parallel algorithm
- pairwise
- sequence alignment
- cluster of workstations
- parallel computation
- parallel version
- interconnection networks
- parallel computers
- similarity measure
- binary search trees
- protein sequences
- markov random field
- multiple sequence alignment
- hardware implementation
- graphics processors
- multiple sequence alignments
- shared memory
- general purpose
- runtime environment
- protein structure alignment
- shared memory multiprocessors
- discovery of association rules
- global alignment
- parallel programming
- parallel implementation
- belief propagation
- orders of magnitude