GenCLiP: a software program for clustering gene lists by literature profiling and constructing gene co-occurrence networks related to custom keywords.
Zhong-Xi HuangHui-Yong TianZhen-Fu HuYi-Bo ZhouJin ZhaoKai-Tai YaoPublished in: BMC Bioinform. (2008)
Keyphrases
- co occurrence
- biomedical literature
- semantic relationships
- gene regulatory networks
- wordnet
- microarray
- keywords
- gene expression
- probabilistic latent semantic analysis
- k means
- gene expression data
- clustering algorithm
- similarity matrix
- named entities
- word co occurrence
- latent semantic analysis
- visual features
- domain specific
- query terms
- semantic relations
- text mining
- mutual reinforcement
- occurrence frequency
- semantically related
- document clustering
- visual words
- image retrieval