RAPID: A ReRAM Processing in-Memory Architecture for DNA Sequence Alignment.
Saransh GuptaMohsen ImaniBehnam KhaleghiVenkatesh KumarTajana RosingPublished in: ISLPED (2019)
Keyphrases
- sequence alignment
- binding sites
- processing elements
- memory management
- real time
- parallel architecture
- comparative genomics
- phylogenetic analysis
- associative memory
- gpu accelerated
- protein sequences
- pairwise
- biological sequences
- sequence databases
- random access
- dna sequences
- dynamic programming
- processing units
- computational power
- hardware implementation
- memory access
- multiple alignment
- smith waterman
- molecular biology
- statistical significance
- amino acids
- dna computing
- gene expression