Finding Motifs in Biological Sequences Using the Micron Automata Processor.
Indranil RoySrinivas AluruPublished in: IPDPS (2014)
Keyphrases
- biological sequences
- sequence data
- motif finding
- dna sequences
- motif discovery
- protein sequences
- computational biology
- molecular biology
- biological data
- binding sites
- high speed
- longest common subsequence
- finite automata
- machine learning
- regular expressions
- data sets
- self organizing maps
- low cost
- natural language processing
- nearest neighbor