Fast binding site mapping using GPUs and CUDA.
Bharat SukhwaniMartin C. HerbordtPublished in: IPDPS Workshops (2010)
Keyphrases
- binding sites
- general purpose
- gpu implementation
- graphics hardware
- gene expression
- parallel programming
- dna sequences
- statistical significance
- motif discovery
- sequence data
- transcription factors
- real time
- graphics processors
- parallel algorithm
- regulatory elements
- protein protein
- parallel computation
- graphics processing units
- parallel implementation
- parallel processing
- microarray
- statistical analysis
- knowledge discovery