rHVDM - a fast and user-friendly R package to predict transcription factor targets from microarray time series data.
Martino BarencoSonia H. ShahDaniel BrewerRobin CallardJaroslav StarkCrispin J. MillerMichael HubankPublished in: BMC Syst. Biol. (2007)
Keyphrases
- user friendly
- microarray
- transcription factors
- gene expression
- high throughput
- microarray data
- regulatory networks
- user interface
- gene expression data
- gene ontology
- gene regulation
- high dimensionality
- biological processes
- experimental conditions
- gene expression levels
- binding sites
- molecular biology
- genome wide
- gene expression datasets
- gene networks
- cancer classification
- microarray data analysis
- gene selection
- cell cycle
- systems biology
- gene sets
- transcription factor binding sites
- dna sequences
- component analysis
- co occurrence
- gene expression profiles
- biological networks
- data sets