An algorithm for the reconstruction of consensus sequences of ancient segmental duplications and transposon copies in eukaryotic genomes.
Abanish SinghUmeshkumar KeswaniDavid LevineCédric FeschotteNikola StojanovicPublished in: Int. J. Bioinform. Res. Appl. (2010)
Keyphrases
- detection algorithm
- computational complexity
- cost function
- dynamic programming
- sequence alignment
- objective function
- search space
- optimization algorithm
- k means
- segmentation algorithm
- computational cost
- discrete tomography
- sequence matching
- reconstruction error
- expectation maximization
- significant improvement
- preprocessing
- three dimensional
- learning algorithm
- probabilistic model
- particle swarm optimization
- np hard
- evolutionary algorithm
- matching algorithm
- recognition algorithm
- optimal solution
- reconstruction method
- neural network